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T.J.Taylor, I.I.Vaisman
Graph theoretic properties of networks formed by the Delaunay tessellation of protein structures. Phys. Rev. E, 2006. 73, 4, p. xxxx.

M.Masso, Z.Lu, I.I.Vaisman
Computational mutagenesis studies of protein structure-function correlations.
Proteins, 2006, 2006, 64, 1, 234-245 [Medline]

E.Mathe, M.Olivier, S.Kato, C.Ishioka, I.I.Vaisman, P.Hainaut
Predicting the transactivation activity of p53 Missense Mutants Using a Four-Body Potential Score Derived from Delaunay Tessellations.
Human Mutation, 2006, 27, 2, 163-172. [Medline]

M.Barenboim, D.C.Jamison, I.I.Vaisman
A Statistical Geometry Approach to the Study of Functional Effects of Human Non-synonymous SNPs.
Human Mutation, 2005, 26, 5, 471-476. [Medline]

T.Taylor, M.Rivera, G.Wilson, I.I.Vaisman
New method for protein secondary structure assignment based on a simple topological descriptor.
Proteins, 2005, 60, 3, 513-524. [Medline]

T.Pushkarsky, V.Yurchenko, C.Vanpouille, B.Brichacek, I.I.Vaisman, S.Hatakeyama, K.I.Nakayama, B.Sherry, M.I.Bukrinsky.
Cell surface expression of CD147/EMMPRIN is regulated by cyclophilin 60.
J Biol Chem., 2005, 280, 30, 27866-27871. [Medline]

D.L.Bostick, M.Shen, I.I.Vaisman
A simple topological representation of protein structure: implications for new, fast, and robust structural classification.
Proteins, 2004, 56, 3, 487-501. [Medline]

Statistical and computational geometry of biomolecular structure,
In: Handbook of Computational Statistics, Springer, 2004, 981-1000 (Book chapter).

A.Tropsha, C.W.Carter, S.Cammer, I.I.Vaisman.
Simplicial neighborhood analysis of protein packing (SNAPP): a computational geometry approach to studying proteins.
Methods Enzymol., 2003, 374, 509-544. [Medline]

M.Masso, I.I.Vaisman.
Comprehensive mutagenesis of HIV-1 protease: a computational geometry approach.
Biochem. Biophys. Res. Comm., 2003, 305, 2, 322-326 [Medline]

D.Bostick, I.I.Vaisman.
A new topological method to measure protein structure similarity.
Biochem. Biophys. Res. Comm., 2003, 304, 2, 320-325 [Medline]

O.Shats, I.I.Vaisman, A.Shats, S.Sherman
Sequence-conformation-structure database for amino acid residues in protein structures.
Bioinformatics, 1999, 15, 6, 525-526. [Medline]

I.I.Vaisman, A.Tropsha, W.Zheng
Compositional Preferences in Quadruplets of Nearest Neighbor Residues in Protein Structures: Statistical Geometry Analysis.
In: Proceedings of the IEEE Symposia on Intelligence and Systems, 1998, p.163-168.
[Computer Society Digital Library PDF
- subscription required] [Preprint - PDF]

W.Zheng, S.J.Cho, I.I.Vaisman, A.Tropsha
A New Approach to Protein Fold Recognition Based on Delaunay Tessellation of Protein Structure.
In: Pacific Symposium on Biocomputing'97, Altman R.B. et al., Eds,
World Scientific, Singapore, 1997, p.487-496 [Medline]

R.K.Singh, A.Tropsha, I.I.Vaisman
Delaunay Tessellation of Proteins: Four Body Nearest Neighbor Propensities of Amino Acid Residues.
J. Comput. Biol. 1996, 3, 2, 213-221. [Medline]
[Preprint - PDF]

Vaisman I.I.
Virtual communities at interdisciplinary boundaries
In: Biocomputing, Hunter L. and Klein T.E., Eds,
World Scientific, Singapore, 1995, p.756-757.

A.Tropsha, R.K.Singh, I.I.Vaisman and W.Zheng
Statistical geometry analysis of proteins: Implications for inverted structure prediction
In: Biocomputing, Hunter L. and Klein T.E., Eds,
World Scientific, Singapore, 1995, p.614-623. [Medline]

D.Hoffman, S.Laiter, R.K.Singh, I.I.Vaisman, A.Tropsha
Rapid protein structure classification using one-dimensional structure profiles on the BioSCAN parallel computer.
Comput. Applic. Biosci. 1995, 11, 6, 675-680. [Medline]

S.Laiter, D.Hoffman, R.K.Singh, I.I.Vaisman, A.Tropsha
Pseudotorsional OCCO bacbone angle as a single descriptor of protein secondary structure.
Protein Science, 1995, 4, 8, 1633-1643. [Medline]

I.I.Vaisman, F.K.Brown, A.Tropsha
Distance Dependence of Water Structure Around Model Solutes.
J. Phys. Chem., 1994, 98, 21, 5559-5564.

Y.M.Kessler, Y.P.Puhovski, M.G.Kiselev, I.I.Vaisman
Computer simulations of liquid systems: possibilities and principal results.
In: Chemistry of Non-Aqueous Solutions. Recent Advances, eds. A.I.Popov, G.Mamantov.
VCH Publishers, New York, 1994, pp.307-373. (Book chapter)

I.I.Vaisman, L.Perera, M.L.Berkowitz
Mobility of stretched water.
J.Chem.Phys., 1993, 98, 12, 9859-9862

Y.M.Kessler, I.I.Vaisman, M.G.Kiselev, Y.P.Puhovski
Preferential solvation of ions in binary mixed solvents: NMR and simulation data.
Acta Chim. Hung., 1992, 129, 6, 787-824 (Feature article).

I.I.Vaisman, M.L.Berkowitz
Local structural order and molecular associations in water-DMSO mixtures. Molecular dynamics study.

J. Am. Chem. Soc., 1992, 114, 20, 7889-7896

Y.P.Puhovski, M.G.Kiselev, I.I.Vaisman, Y.M.Kessler
Structural and dynamic peculiarities of Na+ and Cl- hydration from results of MD experiment.
In: Thermodynamics of Electrolyte Solutions, ed. G.A.Krestov. Ivanovo, 1992, pp.62-68.

I.I.Vaisman, M.G.Kiselev, Y.P.Puhovski, Y.M.Kessler
The Na+ ion solvation in water- hexamethylphosphorictriamide mixture: Molecular dynamics simulation.
In: Modelling of Molecular Structures and Properties, ed. J.-L. Rivail,
Stud. Phys. Theor. Chem. v.71, Elsevier, Amsterdam, 1990, pp.187-194.

Y.M.Kessler, A.N.Petrov, I.I.Vaisman, V.V.Goncharov, G.A.Alper
The influence of cations on the hydration shell of hexamethylphosphoramide.
Russ. J. Phys. Chem., 1990, 64, 2, 247-252.

Y.M.Kessler, R.S.Kumeev, I.I.Vaisman, R.B.Lyalina, R.H.Bratishko
Ionic mobilities at infinite dilution: Structural aspects.
Ber. Bunsenges. Phys. Chem., 1989, 93, 7, 770-782.

M.G.Kiselev, I.I.Vaisman, Y.P.Puhovski, Y.M.Kessler
Thermodynamic properties of the water-HMPT system from molecular dynamics data.
In: Thermodynamics of Nonelectrolyte Solutions, ed. G.A.Krestov. Ivanovo, 1989, pp.79-84.
(Chem. Abstr. 112:126600v).

I.I.Vaisman, R.B.Lyalina, Y.M.Kessler, R.S.Kumeev, V.V.Goncharov
Effect of solvent structure on the mobility of ions at infinite dilution.
Russ. J. Phys. Chem., 1988, 62, 3, 838-840.

M.G.Kiselev, B.G.Abrosimov, I.I.Vaisman, Y.M.Kessler
Error estimation in molecular dynamics experiments with a tabulated intermolecular interaction potential.
Mol. Simulation, 1988, 1, 5, 321-326.

N.A.Abakumova, I.I.Shamonov, Y.M.Kessler, I.I.Vaisman
Fusibility diagrams of binary systems of water with HMPT, DMF, DEP, DMA, acetone, and THF.
In: Modern Problems in Physical Chemistry of Solutions. Leningrad, 1981, v.2, pp.47-54.
(Chem. Abstr. 98:78941a).

Y.M.Kessler, N.A.Abakumova, I.I.Vaisman
The fusion diagrams for the water-dimethylform-amide and water-diethylformamide systems.
Russ. J. Phys. Chem., 1981, 55, 10, 2682-2684.

Conference Presentations

Created in July, 1994. Last update: June, 2007.